You hit the nail on the head, everything you highlighted was exactly what I thought as I was playing. It was as if the story was written by someone who had never played the trooper character story, but given a summation in very wide brush strokes, then told, "now go, write the trooper/Havoc squad chapter". It was almost like they didn't care at all. And you're right, "where is my wife?" should have been the first thing he said when he saw Jorgin. And there were so many inconsistencies from the beginning of the Fallen Empire when the trooper asks where Havoc Squad is and Theron is like, "eh... I dunno", to chapter 11's "I have contacts in your old outfit, Havoc Squad". Wait... whuuuuuut? From a story perspective this chapter was so bizarre and very disappointing.