There might already be a thread on this, if so I apologize. That said I have to say that I would like some ways to customize my ship so that it reflects my toon and doesn't look exactly like every other ship of the same design.
1. Allow us to change the color of our ships, again my Defender is exactly the same as everyone's. Maybe allow us to add war damage to the hull some us do still do space missions after all.
2. I have a boat load of gear collecting dust in my cargo hold that doesn't really work for my companions. Let me display it in my room on my ship. Hang weapons on the walls, maybe add mannequins to display older gear.
3. Have the crew (campanions) actually move about the ship. Every time I jump on ship there they are still in the exact same place I left them. Further maybe some interaction between the campanions themselves (I'd love to see Scourge force choking Rusk as an example ).
4. Add paintings to the various social vendors again that can be displayed on the walls.
The above are just some of the ideas that I think would add some flavor to the ships in this game, after all these ships are our homes away from home while out saving (or destroying) the galaxy.
For some cool ideas of your own? Please add them to this thread!