Ok things i have tried to get this to work it seems anything i do with this new quest line in the way of rewards are broken including the codex and yes this includes fighting the boss again.

1. Logout of the game (cold restart of tor)

2. remove all items and then readd to companion

below is a pic showing the infection customization is the correct one for the right companion and it's failing to work now if i am doing something wrong the only way to see what he looks like is by doing the test with the ctrl left click please inform me is there a switch somewhere to show all customization ?

http://i40.tinypic.com/35cmy2q.jpg