ive recently finished Knights of the eternal throne and just started war for iokath i got up to the point wear the jedi bombs my place because i joined with the empire but after that it stops gives me daily and weekly missions..is that part of the story or no and how do i continue it?

Which Jedi bombs your place? I get that Elara Dorne throws a flash-bang grenade to make her escape, but she's a soldier, not a Jedi.