Let me explain it again:
1) Get to lvl 50
2) Do regular lvl 50 FP's to get some better than starting lvl 50 gear
3) Do HM FP's to get Columi gear. You don't want to do HM FP's, then do SM EV/KP to get Columi,
4) Do HM EV/KP to get Rakata. Or you can do SM EC/TFB (Please notice in the patch 1.4 notes that SM EC was really nerfed).
5) Do HM EC/TFB.
So, you can get from 1 --> 5 without doing a single story mode. Got it?
It makes NO SENSE to remove BH comms from NiM KP. So let me get this straight, if I PUG it through the group finder, I can get BH comms for running SM KP, but not NiM KP with a group of my own choosing? How does that make any sense?
Want real progression?
EV/KP SMs available in the group finder for Columi gear rewards and Daily Comms.
(Keep HM FPs as they are, and reward putting up with PUGs with a few BH comms at the end, as currently happens).
HM KP & EV and NiMs should have lockouts separated, all available in the group finder for the BH Comms that SM rewards right now. Both drop Rakata gear and additionally, in NiM, all bosses drop a couple BH comms.
Then you can run SM EC and SM TfB if you want to learn the fights and mechanics with a quick run (since you would be "over geared" in Rakata, this should mean you can clear either OP in an hour or less). This is valuable also to learn these OPs in a different role, or with a different mix of roles (which makes it worth having around for more than just one run in some cases). Also, everybody gets to see the end-game content even if they aren't in a hard core raiding guild.
Once you have the mechanics down, then you run HM EC and TfB for BH gear, which should drop more frequently, and campaign gear/dread guard gear definitely should since everyone in the raid is competing for that one single token. I won't even start on a discussion of having to purchase multiple pieces of BH gear in order to have decent mods for your class and how long that takes. And yes, I understand that it is my choice to not over-stack Alacrity, but I think that's been just about everybody's choice given how frequently I hear people talking about pulling mods out of BH to maximize the stats on their gear.
Anyway, to be able to run SM in group finder for BH comms but not HM or NiM is silly. I also agree that this isn't really "farming" since you can only do this once a week for a whopping total of 10 BH comms if you run both... but whatever.