Long story short: I went "afk" and when I came back, EVGA Precision said that my GPU temp was 99 degrees C, my GPU usage was 99%, and my fan Usage was 99%.
Program problem? Neh. My computer was on fire. All these was from the loading Character Screen.
In game right now I am in Republic Fleet running at 79-82c, 50-90% GPU usage, and 80% fan speed.
I'm not sure what was going on in the Character menu, but I just wanted you guys to hear about this.
EDIT: Thanks to some great replys I believe I have figured it out. Vertical Sync being turned off can obvious boost your FPS if not set to your refresh rate. Once I went back to full screen mode(out of windowed) and turned VS on, All problems were gone. Thanks for the help guys and I hope you there at BW can possible fix this at your end.