While this is a seriously annoying bug, as a dev myself, I so not see this as game breaking. Yes, annoying as all h***. But not broken, per se. The Darkness on Ilum bonus never firing for me... now that's a breaking bug.
As for why it's going to end up taking four weeks to patch in another zero to the Binary Star rep...? THAT I just do not understand. Removing rep altogether is, I suspect, a much more complex patch -- especially if they never coded a "no cap" code path in the first place.